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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43829169_43829701_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43829169 - 43829701
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTCTTTGTATG
Flanking Amino Acid:
TRQIDPKLGVSLLETVLEAF
Intron Amino Acid Position:
1683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.5
33.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86.4
0.82
0.7
81.2
30.8
Minor 5ss
31.5
-2.1
3
42.7
44.3
Minor BPS
44.1
-0.6
1.7
48.39
40

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400