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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43831454_43831846_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43831454 - 43831846
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TGAACCTTCACT
Flanking Amino Acid:
VRRGLKSKTENIQQDYTSLL
Intron Amino Acid Position:
1544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
82.6
0.73
0.8
77.4
31.3
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
63.5
0.51
1.8
78.8
42.7

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400