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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43832693_43832782_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43832693 - 43832782
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGAATG
Flanking Amino Acid:
ELKYITDVVKLNAFDQRHLD
Intron Amino Acid Position:
1441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76
34.6
Major BPS
100
1.24
0.5
100
0
Major PPT
83.6
0.76
0.7
81.5
29.7
Minor 5ss
40.4
-1.1
2.9
53.8
43.4
Minor BPS
64
0.3
1.8
73.82
38.3

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400