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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43835611_43837654_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43835611 - 43837654
Intron Length:
2044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCACG
5'SS Class:
strong_major
3'SS Sequence:
GTACCCTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTACCCTTTACA
Flanking Amino Acid:
VVMDTGEAMEETLSLGCRLV
Intron Amino Acid Position:
1298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68
42.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76
0.59
0.9
68.6
37.1
Minor 5ss
45.8
-0.4
2.5
58.1
46.3
Minor BPS
63.9
0.43
1.7
71.1
40

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400