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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43843509_43844063_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43843509 - 43844063
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTACA
5'SS Class:
major
3'SS Sequence:
TTCTGTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGTAT
U12 Branch Point Sequence:
GCTTCTCTAAGT
Flanking Amino Acid:
LFEAVKQFSNGPCQTAVLRS
Intron Amino Acid Position:
1078

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.3
37.4
Major BPS
58.9
0.22
1.5
59.6
46.8
Major PPT
78.2
0.64
0.9
72.6
36.4
Minor 5ss
34.8
-1.7
2.9
39.8
40.9
Minor BPS
53.6
0.19
2
72.99
44

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400