Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43844231_43844744_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43844231 - 43844744

Intron Length:

514

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTTGTTGT

5'SS Class:

major

3'SS Sequence:

TTGTCTCTTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTAAT

U12 Branch Point Sequence:

TGTCTCTTGAAG

Flanking Amino Acid:

HRPYLIPVLMRILYGRMRNK

Intron Amino Acid Position:

1022

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.2

72.6

39.2

Major BPS

70.5

0.51

1.1

69.7

35.5

Major PPT

74.6

0.55

75.8

33.1

Minor 5ss

44.4

-0.6

2.5

59.5

44.9

Minor BPS

56.7

0.06

1.5

61.81

39.7

Associated Gene:

Gene:

UTP20

Ensembl Gene ID:

ENSAPLG00000015651

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016392

43809377 - 43873776

64400