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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43844871_43845429_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43844871 - 43845429
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTATTACTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTACTC
Flanking Amino Acid:
TYKHPHLLPYRENLERLLED
Intron Amino Acid Position:
980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.6
0.64
0.9
70.5
40
Minor 5ss
31
-2.2
3.4
42.5
44.5
Minor BPS
53.9
0.1
1.8
68.12
37.6

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400