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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43845516_43847586_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43845516 - 43847586
Intron Length:
2071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCTA
5'SS Class:
major
3'SS Sequence:
CTATAAACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAA
U12 Branch Point Sequence:
TCTTCTATAAAC
Flanking Amino Acid:
EPKLNALYTQLLCHQDQNVQ
Intron Amino Acid Position:
952

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
67.6
39
Major BPS
66.3
0.4
1.1
68
34.4
Major PPT
68
0.41
1
60.1
40
Minor 5ss
29
-2.4
3.3
38.5
46.5
Minor BPS
61.1
0.33
1.7
72.43
38.5

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400