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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43851126_43851838_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43851126 - 43851838
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATCGGTTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATCAT
U12 Branch Point Sequence:
AGATACTTACTT
Flanking Amino Acid:
EHLERAAVYAEMELQNELDE
Intron Amino Acid Position:
771

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
75.9
0.64
1.1
77.7
35.2
Major PPT
68.7
0.42
0.9
61.6
39.5
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
53.1
0.18
1.8
69.26
41.4

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400