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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43851919_43853151_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43851919 - 43853151
Intron Length:
1233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TATGTTTTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
PLWDPVIELITSHAKEMENK
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.8
38.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.1
0.52
1
73.8
41.4
Minor 5ss
35.3
-1.7
2.8
41.7
38.2
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400