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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43853229_43854104_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43853229 - 43854104
Intron Length:
876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TATGCCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AACATCTCAACA
Flanking Amino Acid:
STIPSGPLQEVPLRYLLGML
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
80.5
33.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.5
0.44
0.9
59.9
41.2
Minor 5ss
31.4
-2.1
2.9
42.1
44.5
Minor BPS
53
0.09
1.6
59.86
39.6

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400