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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43854264_43854586_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43854264 - 43854586
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
CTTATTTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
ATGTTTGTAACT
Flanking Amino Acid:
FENPPSTVIESDGTGELQSV
Intron Amino Acid Position:
666

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
81.7
0.71
0.9
80.4
37
Minor 5ss
33
-1.9
3.6
46.2
49.1
Minor BPS
57.9
0.32
2
77.17
40

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400