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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43854650_43855057_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43854650 - 43855057
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCACTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACGT
Flanking Amino Acid:
QPNISTGISKVRLLTVRILN
Intron Amino Acid Position:
645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
80.9
0.7
0.8
75
33.1
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
49.3
0.03
2
72.98
43.9

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400