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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43856506_43860897_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43856506 - 43860897
Intron Length:
4392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TGGTAAATATAC
Flanking Amino Acid:
AAIEKGTLCKGSLFVACQAV
Intron Amino Acid Position:
559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
78.4
32.4
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
80.6
0.69
0.8
72.6
37.6
Minor 5ss
35.9
-1.6
2.7
43.9
43.8
Minor BPS
37.8
-0.9
2.1
48.12
40.5

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400