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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43860987_43861469_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43860987 - 43861469
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTATTTTGAACA
Flanking Amino Acid:
WVALVILPHIRPMDKEIILP
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
75.7
0.58
1
73.5
40.5
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
68.7
0.58
1.3
76.68
33.9

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400