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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43869901_43871393_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43869901 - 43871393
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTCCCTTTAAGA
Flanking Amino Acid:
LMVKDISNIYSLYSTLLAHH
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
36.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.9
0.65
0.9
73.7
36.9
Minor 5ss
31.2
-2.1
3.7
47.6
48
Minor BPS
64.3
0.45
1.6
72.26
40.2

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400