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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43871583_43872007_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
43871583 - 43872007
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGAAACACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTGTCTGAAAC
Flanking Amino Acid:
KGSLAYQPLLDLVVQLARDL
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
59
0.2
1
51.1
41.1
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
54.8
0.13
1.6
66.67
38.5

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400