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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43872141_43872333_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43872141 - 43872333
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACCTAAT
5'SS Class:
major
3'SS Sequence:
TTGTGCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTGCTTTACA
Flanking Amino Acid:
WRELNLTQHFVQFYKEVANK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
70.8
41
Major BPS
100
1.24
0.5
100
0
Major PPT
82.7
0.74
0.9
76.3
37.8
Minor 5ss
42
-0.9
3
56.6
42.9
Minor BPS
60.1
0.31
2.1
75.18
42.3

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400