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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43873276_43873731_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43873276 - 43873731
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
SAPQSGNTHRFLTFSERLSN
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
UTP20
Ensembl Gene ID:
ENSAPLG00000015651
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016392
43809377 - 43873776
64400