Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43888128_43890171_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43888128 - 43890171

Intron Length:

2044

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGTGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTCTGATAAACA

Flanking Amino Acid:

YRLGITSTYEYLELRFNKYL

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

70.4

42.5

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

95.8

1.03

0.5

92.1

18.3

Minor 5ss

36.1

-1.6

3.3

46.8

48.5

Minor BPS

48.4

-0.1

2.3

68.02

44.4

Associated Gene:

Gene:

SLC5A8

Ensembl Gene ID:

ENSAPLG00000015303

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017549

43887795 - 43911266

23472

ENSAPLT00000017401

43887795 - 43911266

23472

ENSAPLT00000015995

43887795 - 43911266

23472