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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43893189_43894224_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43893189 - 43894224
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CACTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTCCTTTCACT
Flanking Amino Acid:
IYAPALALNQVTGFDLWGAV
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82.6
0.73
0.8
80
31.5
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
65
0.55
1.8
82.13
39.2

Associated Gene:

Gene:
SLC5A8
Ensembl Gene ID:
ENSAPLG00000015303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015995
43887795 - 43911266
23472
ENSAPLT00000017549
43887795 - 43911266
23472
ENSAPLT00000017401
43887795 - 43911266
23472