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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43905417_43905704_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43905417 - 43905704
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
CTTCCTTCCACA
Flanking Amino Acid:
LASLMGALLQAALSIFGMVG
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
62
0.3
1
53
34.1
Major PPT
80.9
0.7
0.7
75.7
26.5
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
48.8
-0.1
2
64.68
42

Associated Gene:

Gene:
SLC5A8
Ensembl Gene ID:
ENSAPLG00000015303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017401
43887795 - 43911266
23472
ENSAPLT00000015995
43887795 - 43911266
23472