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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43905417_43906573_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43905417 - 43906573
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCCTTGTAAGT
Flanking Amino Acid:
LASLMGALLQGAFVGLITGF
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.7
84.8
25.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
88.6
0.87
0.7
83.9
31.1
Minor 5ss
31.8
-2.1
3.3
42.9
44.7
Minor BPS
46.4
-0.1
2.2
67.89
43.7

Associated Gene:

Gene:
SLC5A8
Ensembl Gene ID:
ENSAPLG00000015303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017549
43887795 - 43911266
23472