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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43909665_43911134_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43909665 - 43911134
Intron Length:
1470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
CACTTCCCAACA
Flanking Amino Acid:
SNFSQSKSDTAEKVVVLSWK
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.6
34.3
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
38.5
-1.3
3.3
54.7
43.6
Minor BPS
47.3
-0.2
1.9
56.98
42.3

Associated Gene:

Gene:
SLC5A8
Ensembl Gene ID:
ENSAPLG00000015303
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017401
43887795 - 43911266
23472
ENSAPLT00000015995
43887795 - 43911266
23472
ENSAPLT00000017549
43887795 - 43911266
23472