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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43929320_43930329_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43929320 - 43930329
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGACAC
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
TATACTGTGACC
Flanking Amino Acid:
YGLFDEYLEMILQFGFTTIF
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.1
52.4
39.1
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
82.7
0.74
0.7
76.7
31.9
Minor 5ss
39.6
-1.2
3
47.4
42.4
Minor BPS
50.7
0
2.1
67.12
38.8

Associated Gene:

Gene:
ANO4
Ensembl Gene ID:
ENSAPLG00000014449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047758
43927389 - 44038489
111101
ENSAPLT00000015114
43927389 - 44038489
111101