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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43937117_43939608_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43937117 - 43939608
Intron Length:
2492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTTTCTTCACA
Flanking Amino Acid:
EKVALFLTNLEQPRTESEWE
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.7
85.2
32.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
87.8
0.85
0.7
83.3
25.1
Minor 5ss
34.4
-1.8
3.3
49.7
46.6
Minor BPS
69.2
0.6
1.7
78.35
38.8

Associated Gene:

Gene:
ANO4
Ensembl Gene ID:
ENSAPLG00000014449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047758
43927389 - 44038489
111101
ENSAPLT00000015114
43927389 - 44038489
111101