About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43939646_43943293_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43939646 - 43943293
Intron Length:
3648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTCTCTGTTACA
Flanking Amino Acid:
NFCIIMLLNVLYEKVALFLT
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
84.7
0.78
0.8
79.3
32.7
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
50.5
0.01
2.3
70.65
41.9

Associated Gene:

Gene:
ANO4
Ensembl Gene ID:
ENSAPLG00000014449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047758
43927389 - 44038489
111101
ENSAPLT00000015114
43927389 - 44038489
111101