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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43952148_43958459_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43952148 - 43958459
Intron Length:
6312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTGTTTTTCT
Flanking Amino Acid:
VFFAVFMAVWATVFLEFWKR
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
79.4
0.66
0.9
77
37.3
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
41.5
-0.5
3.8
79.44
43

Associated Gene:

Gene:
ANO4
Ensembl Gene ID:
ENSAPLG00000014449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047758
43927389 - 44038489
111101
ENSAPLT00000015114
43927389 - 44038489
111101