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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43958521_43959060_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43958521 - 43959060
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
ATATCCCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTATCATAAATT
Flanking Amino Acid:
RLSDSCVYAKVTHLFDNGAT
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
67.3
0.39
1
64.7
36.8
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
61.5
0.44
1.9
82.08
39.4

Associated Gene:

Gene:
ANO4
Ensembl Gene ID:
ENSAPLG00000014449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015114
43927389 - 44038489
111101
ENSAPLT00000047758
43927389 - 44038489
111101