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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43960063_43965204_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43960063 - 43965204
Intron Length:
5142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTAAAA
Flanking Amino Acid:
WYKYQPLDLVRRYFGEKIGL
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.5
0.48
1
67.9
41.2
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
62.3
0.38
1.4
69.78
36

Associated Gene:

Gene:
ANO4
Ensembl Gene ID:
ENSAPLG00000014449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047758
43927389 - 44038489
111101
ENSAPLT00000015114
43927389 - 44038489
111101