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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43982652_43985506_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43982652 - 43985506
Intron Length:
2855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TTCTTCTCGACT
Flanking Amino Acid:
IEINGRSRRSRRKIYYLHRR
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.1
38.2
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
78.7
0.65
0.9
69.2
41.8
Minor 5ss
34
-1.8
2.9
41.6
45
Minor BPS
66.9
0.61
1.6
82.91
38.6

Associated Gene:

Gene:
ANO4
Ensembl Gene ID:
ENSAPLG00000014449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047758
43927389 - 44038489
111101