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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_43985609_43985851_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43985609 - 43985851
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTATCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GGTATTCTATCC
Flanking Amino Acid:
AELMNVRMPFRPFNPFTAGA
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
73.1
0.52
0.8
71.1
34.1
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
43.9
-0.4
1.8
52.96
38.2

Associated Gene:

Gene:
ANO4
Ensembl Gene ID:
ENSAPLG00000014449
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047758
43927389 - 44038489
111101