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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44145890_44146609_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44145890 - 44146609
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
CTTCCATTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCTTCTTCCATT
Flanking Amino Acid:
RLGDKILFIRMLHGKHVMVR
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
69.9
41.1
Major BPS
65
0.37
1.3
76.1
38
Major PPT
79.4
0.66
0.8
76.9
30.5
Minor 5ss
35.7
-1.6
3.3
45.7
43.5
Minor BPS
53.6
0.19
2
75.4
42.3

Associated Gene:

Gene:
GAS2L3
Ensembl Gene ID:
ENSAPLG00000013956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014550
44144465 - 44155909
11445