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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44147792_44148530_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
44147792 - 44148530
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TAATTGTGTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTGCTTAATT
Flanking Amino Acid:
CLLEIGRIVSRYGVEPPVLV
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
83.1
28.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
50.1
0
1.8
62
48
Minor 5ss
40.4
-1.1
3.2
57.3
47.4
Minor BPS
73.2
0.81
1.7
87.41
38.9

Associated Gene:

Gene:
GAS2L3
Ensembl Gene ID:
ENSAPLG00000013956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014550
44144465 - 44155909
11445