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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44152475_44153934_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44152475 - 44153934
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTGAT
U12 Branch Point Sequence:
TCCAATGTACTT
Flanking Amino Acid:
KKCCTSNNLRNFPMRKVPCK
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.1
30.7
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
76.9
0.61
0.9
76.5
32
Minor 5ss
36
-1.6
2.9
40.8
45.4
Minor BPS
38.5
-0.7
2.2
52.3
43.5

Associated Gene:

Gene:
GAS2L3
Ensembl Gene ID:
ENSAPLG00000013956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014550
44144465 - 44155909
11445