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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44154054_44154706_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44154054 - 44154706
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGTTA
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAC
U12 Branch Point Sequence:
TGTGGAATAACT
Flanking Amino Acid:
DLSIWLSGLLGIEITAERLL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.8
36.2
Major BPS
52.4
0.06
1.2
56
37.3
Major PPT
85.1
0.79
0.6
84.1
23.9
Minor 5ss
34.4
-1.8
3.3
38
46.9
Minor BPS
45.7
-0.2
2.3
71
45.3

Associated Gene:

Gene:
GAS2L3
Ensembl Gene ID:
ENSAPLG00000013956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014550
44144465 - 44155909
11445