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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44161314_44162699_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
44161314 - 44162699
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
AAACCATAATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTTTGAAAC
Flanking Amino Acid:
LLTAIVILSPDRQYIKDRES
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
53
0.07
1.1
49.7
42.1
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
57.7
0.22
1.5
67.73
37.9

Associated Gene:

Gene:
NR1H4
Ensembl Gene ID:
ENSAPLG00000013289
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013865
44161075 - 44184054
22980