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Intron Name: Anas_platyrhynchos_platyrhynchos_1_44162814_44171196_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44162814 - 44171196

Intron Length:

8383

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTATC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

AACTTTTTATTT

Flanking Amino Acid:

VLLEERIRNSGISDEFITPM

Intron Amino Acid Position:

323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.8

83.1

28.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

90.9

0.92

0.6

84.7

30.2

Minor 5ss

-1.7

2.8

42.6

38.5

Minor BPS

54.1

0.21

1.5

66.33

39.3

Associated Gene:

Gene:

NR1H4

Ensembl Gene ID:

ENSAPLG00000013289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013865

44161075 - 44184054

22980