Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44171344_44172876_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44171344 - 44172876

Intron Length:

1533

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATATCCA

5'SS Class:

major

3'SS Sequence:

AATGTCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAT

U12 Branch Point Sequence:

TTATCTATAATG

Flanking Amino Acid:

VLVEFTKKLPGFQTLDHEDQ

Intron Amino Acid Position:

274

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

66.6

38.6

Major BPS

83.6

0.84

0.8

71.9

35.8

Major PPT

0.43

0.9

59.1

Minor 5ss

39.9

-1.1

2.8

45.4

Minor BPS

63.1

0.27

1.6

69.09

38.5

Associated Gene:

Gene:

NR1H4

Ensembl Gene ID:

ENSAPLG00000013289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013865

44161075 - 44184054

22980