Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44174104_44174614_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44174104 - 44174614

Intron Length:

511

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAATAAAA

5'SS Class:

major

3'SS Sequence:

TTTGCCAGTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

CATTTCATGATG

Flanking Amino Acid:

QVTSTTKMYREKVEFTPEQQ

Intron Amino Acid Position:

208

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.54

1.1

69.7

36.3

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

68.3

0.41

62.6

38.5

Minor 5ss

32.4

-2

2.9

32.3

Minor BPS

49.5

-0.1

1.7

55.42

40.3

Associated Gene:

Gene:

NR1H4

Ensembl Gene ID:

ENSAPLG00000013289

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013865

44161075 - 44184054

22980