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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44174749_44178109_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44174749 - 44178109
Intron Length:
3361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TTGTGTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
AATGCAAAAAAT
Flanking Amino Acid:
KCKQMGMLAECLLTEIQCKS
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
73.8
0.54
1
65.8
45.3
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
40.5
-0.6
2.1
59.36
43.1

Associated Gene:

Gene:
NR1H4
Ensembl Gene ID:
ENSAPLG00000013289
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013865
44161075 - 44184054
22980