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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44178251_44183691_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44178251 - 44183691
Intron Length:
5441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATC
Flanking Amino Acid:
YNALTCEGCKGFFRRSITKN
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77.7
0.62
1
73.2
41.7
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
72.5
0.69
1.5
82.19
31.8

Associated Gene:

Gene:
NR1H4
Ensembl Gene ID:
ENSAPLG00000013289
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013865
44161075 - 44184054
22980