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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44215142_44215795_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44215142 - 44215795
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATT
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGAAAA
Flanking Amino Acid:
LIVGAMTKHKTREEWQNVFL
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
84.6
33.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
80.9
0.7
0.9
77.4
36.3
Minor 5ss
45
-0.5
3
66.7
44.2
Minor BPS
64.3
0.44
1.7
79.27
36

Associated Gene:

Gene:
SLC17A8
Ensembl Gene ID:
ENSAPLG00000012919
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027816
44212596 - 44233002
20407
ENSAPLT00000013471
44214803 - 44244235
29433