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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44218883_44220667_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44218883 - 44220667
Intron Length:
1785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATTTGTCTAATT
Flanking Amino Acid:
EEVFGFAISKVGLLSAVPHM
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78.6
35.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
77.5
0.62
0.9
70.8
38.7
Minor 5ss
43.3
-0.7
3
60.2
44.5
Minor BPS
54.7
0.23
2
78.67
38

Associated Gene:

Gene:
SLC17A8
Ensembl Gene ID:
ENSAPLG00000012919
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027816
44212596 - 44233002
20407
ENSAPLT00000013471
44214803 - 44244235
29433