Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44226205_44226672_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

44226205 - 44226672

Intron Length:

468

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGAACA

5'SS Class:

strong_major

3'SS Sequence:

AAATGTCTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

AAATGTCTAACA

Flanking Amino Acid:

FVRILQGLVEGVTYPACHGM

Intron Amino Acid Position:

158

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

76.1

32.7

Major BPS

71.6

0.54

33.1

Major PPT

62.5

0.28

1.1

55.6

43.6

Minor 5ss

39.8

-1.1

2.8

Minor BPS

-0.1

60.66

38.9

Associated Gene:

Gene:

SLC17A8

Ensembl Gene ID:

ENSAPLG00000012919

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027816

44212596 - 44233002

20407

ENSAPLT00000013471

44214803 - 44244235

29433