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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44261595_44262214_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44261595 - 44262214
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ATATATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATATTAACT
Flanking Amino Acid:
ATAITPPVKQTKDLTDTLID
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80
0.67
0.9
73.8
40.5
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
67.1
0.62
1.6
83.24
37

Associated Gene:

Gene:
SCYL2
Ensembl Gene ID:
ENSAPLG00000012666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032411
44260941 - 44291686
30746
ENSAPLT00000026014
44260941 - 44291686
30746
ENSAPLT00000013235
44260941 - 44282480
21540