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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44262335_44263546_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44262335 - 44263546
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACCAT
U12 Branch Point Sequence:
TACTGTCCAACT
Flanking Amino Acid:
DNELSSKQKKASLTLEEKQK
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
57.8
0.19
1.3
67.1
39.2
Major PPT
75.8
0.58
1
74.6
33.9
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
45
-0.3
2.2
65.87
44.7

Associated Gene:

Gene:
SCYL2
Ensembl Gene ID:
ENSAPLG00000012666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032411
44260941 - 44291686
30746
ENSAPLT00000026014
44260941 - 44291686
30746
ENSAPLT00000013235
44260941 - 44282480
21540