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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44263637_44263752_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44263637 - 44263752
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TGATCTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTCACATAACT
Flanking Amino Acid:
EARSSSTSNQIDKVFNNTGT
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
62.8
0.29
1
59.4
40.7
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
65.7
0.57
1.8
88.19
35.9

Associated Gene:

Gene:
SCYL2
Ensembl Gene ID:
ENSAPLG00000012666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026014
44260941 - 44291686
30746
ENSAPLT00000013235
44260941 - 44282480
21540
ENSAPLT00000032411
44260941 - 44291686
30746