About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44264588_44265275_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44264588 - 44265275
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
ATTTCTTTTACA
Flanking Amino Acid:
SIENNLNLNQFNSFICVIRD
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
36
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
89.6
0.89
0.7
84.2
30
Minor 5ss
32.4
-2
3.1
40.9
45.1
Minor BPS
73
0.72
1.5
81.53
33.1

Associated Gene:

Gene:
SCYL2
Ensembl Gene ID:
ENSAPLG00000012666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032411
44260941 - 44291686
30746
ENSAPLT00000026014
44260941 - 44291686
30746
ENSAPLT00000013235
44260941 - 44282480
21540