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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_44267214_44267681_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
44267214 - 44267681
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
CCATACTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTTGTTTAAAA
Flanking Amino Acid:
NACLQTSSLAVRVNSLVCLG
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
66.9
0.38
0.9
60.7
34.7
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
66.9
0.53
1.8
80.33
35.6

Associated Gene:

Gene:
SCYL2
Ensembl Gene ID:
ENSAPLG00000012666
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032411
44260941 - 44291686
30746
ENSAPLT00000026014
44260941 - 44291686
30746
ENSAPLT00000013235
44260941 - 44282480
21540